jaga
Class Genotype
java.lang.Object
|
+--java.util.BitSet
|
+--jaga.BitSet
|
+--jaga.Genotype
- All Implemented Interfaces:
- java.lang.Cloneable, java.lang.Comparable, islandev.Individual, java.io.Serializable
- Direct Known Subclasses:
- FullOrderGenotype
- public class Genotype
- extends BitSet
- implements islandev.Individual
Genotypes are bitsets with a fitness which is reset whenever a bit is touched.
Genotypes also contain properties, for example to store different paramaters
about individuals or multiple fitness values.
- See Also:
- Serialized Form
Constructor Summary |
Genotype()
|
Genotype(int length)
Creates new Genotype |
Genotype(java.lang.String bits)
|
Genotype(java.lang.String symbols,
int length,
int base)
|
Method Summary |
void |
addProperty(java.lang.Object value)
|
boolean |
bitSetEquals(BitSet o)
|
void |
clear(int idx)
|
java.lang.Object |
clone()
|
int |
compareTo(java.lang.Object o)
Only look at fitness when comparing. |
boolean |
equals(java.lang.Object o)
|
void |
flip(int index)
Flips this bit (0->1, 1->0) |
double |
getFitness()
|
double |
getFitness(int n)
Assuming properties are double, returns the nth fitness, st. |
java.lang.Object |
getProperty(int index)
Returns a property of this genotype |
void |
set(int idx)
|
void |
setFitness(double fitness)
|
void |
setLength(int length)
|
void |
setProperty(int index,
java.lang.Object value)
This sets a property of this genotype |
void |
setTo(int idx,
boolean value)
automatically reset fitness when genetic code modified |
java.lang.String |
toString()
Will convert the BitSet to a string using the current codebase. |
void |
touched()
|
Methods inherited from class java.util.BitSet |
and, andNot, get, or, size, xor |
Methods inherited from class java.lang.Object |
getClass, notify, notifyAll, wait, wait, wait |
MAX_FITNESS
public static final double MAX_FITNESS
GEN_DECL
public static final java.lang.String GEN_DECL
FIT_DECL
public static final java.lang.String FIT_DECL
LEN_DECL
public static final java.lang.String LEN_DECL
PROP_DECL
public static final java.lang.String PROP_DECL
Genotype
public Genotype(int length)
- Creates new Genotype
Genotype
public Genotype()
Genotype
public Genotype(java.lang.String bits)
Genotype
public Genotype(java.lang.String symbols,
int length,
int base)
compareTo
public int compareTo(java.lang.Object o)
- Only look at fitness when comparing.
- Specified by:
compareTo
in interface java.lang.Comparable
setTo
public void setTo(int idx,
boolean value)
- automatically reset fitness when genetic code modified
- Overrides:
setTo
in class BitSet
set
public void set(int idx)
- Overrides:
set
in class java.util.BitSet
clear
public void clear(int idx)
- Overrides:
clear
in class java.util.BitSet
flip
public void flip(int index)
- Description copied from class:
BitSet
- Flips this bit (0->1, 1->0)
- Overrides:
flip
in class BitSet
setLength
public void setLength(int length)
- Overrides:
setLength
in class BitSet
touched
public void touched()
equals
public boolean equals(java.lang.Object o)
- Overrides:
equals
in class java.util.BitSet
bitSetEquals
public boolean bitSetEquals(BitSet o)
toString
public java.lang.String toString()
- Description copied from class:
BitSet
- Will convert the BitSet to a string using the current codebase.
- Overrides:
toString
in class BitSet
getFitness
public double getFitness()
- Specified by:
getFitness
in interface islandev.Individual
setFitness
public void setFitness(double fitness)
setProperty
public void setProperty(int index,
java.lang.Object value)
- This sets a property of this genotype
addProperty
public void addProperty(java.lang.Object value)
getProperty
public java.lang.Object getProperty(int index)
- Returns a property of this genotype
- Specified by:
getProperty
in interface islandev.Individual
getFitness
public double getFitness(int n)
- Assuming properties are double, returns the nth fitness, st. -1 is .fitness and for
n >= 0 its the nth property.
clone
public java.lang.Object clone()
- Overrides:
clone
in class java.util.BitSet